http://www.mackenziemathislab.org/deeplabcutblog daily 0.75 2021-08-28 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605648737857-XE67K7C5KENNXYN3YNOZ/figure3.jpg DeepLabCut Blog http://www.mackenziemathislab.org/deeplabcutblog/2021/8/czi-dlc monthly 0.5 2024-06-06 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1630149968988-EDIQMJYDEBXHD14NU4PZ/CZI_DLC.png DeepLabCut Blog - DeepLabCut receives an EOSS award and introduces a new AI Residency Program! - Make it stand out Whatever it is, the way you tell your story online can make all the difference. https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1630151639550-12K6115LVH9NDZW7W9CH/DLC_AIRes.jpg DeepLabCut Blog - DeepLabCut receives an EOSS award and introduces a new AI Residency Program! - Make it stand out Whatever it is, the way you tell your story online can make all the difference. http://www.mackenziemathislab.org/deeplabcutblog/2021/8/5/22-the-stable-release-is-up monthly 0.5 2024-06-06 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1628171938006-V66EM1TW4WWP7XHBJERG/maDLC.png DeepLabCut Blog - DeepLabCut 2.2 - Make it stand out Whatever it is, the way you tell your story online can make all the difference. https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1628170549702-2FKII2KH2Z2XH7ZEJBL8/123963082-682b3400-d9b2-11eb-9c3e-16ccf45a7589.png DeepLabCut Blog - DeepLabCut 2.2 - Make it stand out Whatever it is, the way you tell your story online can make all the difference. http://www.mackenziemathislab.org/deeplabcutblog/2021/6/30/tensorflow-2x-is-the-new-default-in-deeplabcut monthly 0.5 2024-06-06 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1625080640532-HP7Q8DMDUKJ1KG61ACNQ/qrcode_mackenzie-weygandt.squarespace.com.png DeepLabCut Blog - Tensorflow 2.x will be the new default in DeepLabCut! (2.2rc3 up now!) - Make it stand out Scan the QR code (or click HERE) to see the original blog post on why we rolled up! https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1625080358342-WP9G4JMANGNKO9CS2IEO/model.png DeepLabCut Blog - Tensorflow 2.x will be the new default in DeepLabCut! (2.2rc3 up now!) - Make it stand out adapted from: https://blog.tensorflow.org/2019/01/whats-coming-in-tensorflow-2-0.html https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1625080866194-ZHJ9H08MMVEN95ETR6YB/123963082-682b3400-d9b2-11eb-9c3e-16ccf45a7589.png DeepLabCut Blog - Tensorflow 2.x will be the new default in DeepLabCut! (2.2rc3 up now!) - Make it stand out Whatever it is, the way you tell your story online can make all the difference. http://www.mackenziemathislab.org/deeplabcutblog/2021/5/27/22rc2 monthly 0.5 2024-06-06 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1622147599882-TL1EJY5VC8R6QNW0GFGS/ezgif.com-gif-maker+%2812%29.gif DeepLabCut Blog - 2.2rc2! is up - Make it stand out Whatever it is, the way you tell your story online can make all the difference. https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1622149771446-N1CY7Q1OKSRIQ4P7QBXT/ID.png DeepLabCut Blog - 2.2rc2! is up - Make it stand out Whatever it is, the way you tell your story online can make all the difference. https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1622145627660-77V5URRNV0IWTDM92YLL/ezgif.com-gif-maker+%2810%29.gif DeepLabCut Blog - 2.2rc2! is up - Make it stand out Whatever it is, the way you tell your story online can make all the difference. http://www.mackenziemathislab.org/deeplabcutblog/2021/4/2/multi-animal-deeplabcut-the-full-22-release monthly 0.5 2024-06-06 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1619689751093-WQH5G17PKWMEKK0OEUB8/DLC_logo_blk.png DeepLabCut Blog - multi-animal DeepLabCut: 2.2rc1 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1619690040874-MKTONJLRDEWB68MDQU1M/Screen+Shot+2021-04-28+at+7.17.48+PM.png DeepLabCut Blog - multi-animal DeepLabCut: 2.2rc1 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1620044219490-8ULL1593AF6BI36X44M9/dlc4.jpg DeepLabCut Blog - multi-animal DeepLabCut: 2.2rc1 left: Example images from the 4 datasets with ground truth and network annotations. right: Performance of ResNets, EfficientNets, and our new multi-fusion, multi-stage DLCRNet! https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1619982291464-S1BA55CKZP3550I9LS8O/dd.jpg DeepLabCut Blog - multi-animal DeepLabCut: 2.2rc1 http://www.mackenziemathislab.org/deeplabcutblog/2020/11/23/rolling-up-to-tensorflow-2 monthly 0.5 2024-06-06 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1607098030289-UIEERA9A0G14CZYVAE92/Screen+Shot+2020-12-04+at+5.04.34+PM.png DeepLabCut Blog - Rolling up to Tensorflow 2+ http://www.mackenziemathislab.org/deeplabcutblog/2020/11/18/czidlc monthly 0.5 2024-06-06 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605721171852-85HRYZDCTSVZB5ILBGY5/eoss.png DeepLabCut Blog - Onwards to 2021 ... some major updates! https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605806453218-E6FJFEZJ0M1Z3WGWQAOC/CZI-OpenSciHero.jpg DeepLabCut Blog - Onwards to 2021 ... some major updates! images from: https://chanzuckerberg.com/newsroom/czi-awards-4-7-million-for-open-source-software-and-organizations-advancing-open-science/ https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605720150947-KWFMBRL15UGBJQL5U9U3/1_bf7zN0U8XCbBZEEZaAoiHA.jpeg DeepLabCut Blog - Onwards to 2021 ... some major updates! https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605720761790-U4JZQBIXT9I6O4DYB2S0/fig1.jpg DeepLabCut Blog - Onwards to 2021 ... some major updates! https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605720761367-Z8B2FVA7JQPE8TBZQMDB/fig2.jpg DeepLabCut Blog - Onwards to 2021 ... some major updates! https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605720758768-UG9186UPB7IODEZP1KIL/fig6.jpg DeepLabCut Blog - Onwards to 2021 ... some major updates! https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605720759044-U5B2LLXWBUDPMUQ0K0QL/fig5.jpg DeepLabCut Blog - Onwards to 2021 ... some major updates! https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605720760267-CFNURJHV9ER9V0QXX5SI/fig4.jpg DeepLabCut Blog - Onwards to 2021 ... some major updates! https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605720760134-8KP5FJKWU6T4BXXJONNV/fig3.jpg DeepLabCut Blog - Onwards to 2021 ... some major updates! https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605723928750-NLF5O7BIJ66YLV2RQWBY/fig7.jpg DeepLabCut Blog - Onwards to 2021 ... some major updates! https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605720757579-7OOQQSQ7T6XXEJ4ZIOW5/fig8.jpg DeepLabCut Blog - Onwards to 2021 ... some major updates! https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605805868970-NFXLX8CF0SEJWWUDBH7J/ezgif.com-gif-maker+%284%29.gif DeepLabCut Blog - Onwards to 2021 ... some major updates! https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605805368443-801XMPHS61BG34NA538P/ezgif.com-gif-maker+%283%29.gif DeepLabCut Blog - Onwards to 2021 ... some major updates! http://www.mackenziemathislab.org/deeplabcutblog/2020/11/19/code-release-219 monthly 0.5 2024-06-06 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605792777104-M66BHXNQUFITYFNGS5FE/Screen+Shot+2020-11-19+at+2.32.37+PM.png DeepLabCut Blog - Code Release: 2.1.9 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605790279521-I87L4EJWJ1U3G34SNNXN/workflowmadlc.png DeepLabCut Blog - Code Release: 2.1.9 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605792115849-LL7Q2UT1B1HMG2WZPXBL/antSkeleton.gif DeepLabCut Blog - Code Release: 2.1.9 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605791435578-X9YTY2BGQIJIBSDYCYM4/delt.png DeepLabCut Blog - Code Release: 2.1.9 http://www.mackenziemathislab.org/deeplabcutblog/2020/11/17/tracking-pigeons-with-neslihan-wittek monthly 0.5 2024-06-06 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605651668805-G7XUS24YQQW9358GZE3W/nw.jpeg DeepLabCut Blog - Tracking Pigeons with Neslihan Wittek https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605651457492-TGHUR2FTM1AWC1X4IYV6/pigeons DeepLabCut Blog - Tracking Pigeons with Neslihan Wittek https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605651339605-C1WHECP1UPBE154R7PH3/3ddlc.png DeepLabCut Blog - Tracking Pigeons with Neslihan Wittek https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605651503406-9V1JRDA9IQPWKFF8OX32/behave.gif DeepLabCut Blog - Tracking Pigeons with Neslihan Wittek http://www.mackenziemathislab.org/deeplabcutblog/2020/11/17/welcome-to-the-new-dlc-blog monthly 0.5 2024-06-06 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605646569254-13M1YJQ8NFB5E5H0MT0E/dlc_logo.png DeepLabCut Blog - Welcome to the new DeepLabCut Blog! https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605645762364-7NHJ06UNYOZQGZFXOFZ5/courePreview.gif DeepLabCut Blog - Welcome to the new DeepLabCut Blog! https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605652534605-UPKPDCXAPE3OJ5FKJL2D/network.png DeepLabCut Blog - Welcome to the new DeepLabCut Blog! http://www.mackenziemathislab.org/deeplabcutblog/category/Code+Release monthly 0.5 http://www.mackenziemathislab.org/deeplabcutblog/category/Announcement monthly 0.5 http://www.mackenziemathislab.org/deeplabcutblog/category/User+Highlight%21 monthly 0.5 http://www.mackenziemathislab.org/deeplabcutblog/tag/kickoff monthly 0.5 http://www.mackenziemathislab.org/deeplabcutblog/tag/Funding monthly 0.5 http://www.mackenziemathislab.org/deeplabcutblog/tag/Fudning monthly 0.5 http://www.mackenziemathislab.org/deeplabcutblog/tag/maDeepLabCut monthly 0.5 http://www.mackenziemathislab.org/deeplabcutblog/tag/2021 monthly 0.5 http://www.mackenziemathislab.org/deeplabcutblog/tag/maDLC monthly 0.5 http://www.mackenziemathislab.org/deeplabcutblog/tag/EOSS monthly 0.5 http://www.mackenziemathislab.org/deeplabcutblog/tag/deeplabcut monthly 0.5 http://www.mackenziemathislab.org/deeplabcutblog/tag/tensorflow monthly 0.5 http://www.mackenziemathislab.org/deeplabcutblog/tag/CZI monthly 0.5 http://www.mackenziemathislab.org/deeplabcutblog/tag/2.1.9 monthly 0.5 http://www.mackenziemathislab.org/deeplabcutblog/tag/2.2 monthly 0.5 http://www.mackenziemathislab.org/deeplabcutblog/tag/pose+estimation monthly 0.5 http://www.mackenziemathislab.org/deeplabcutblog/tag/animal+pose+estimation monthly 0.5 http://www.mackenziemathislab.org/deeplabcutblog/tag/DLC+AI+Residency monthly 0.5 http://www.mackenziemathislab.org/location daily 0.75 2025-01-05 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1605543602550-9VKWC1S5E4D2W09KBVRR/IMG_3282.JPG Location http://www.mackenziemathislab.org/publications daily 0.75 2026-01-26 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1650733317553-E8GD8WPNA02FGTKD8P8G/fishDLC.jpeg Publications https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/fb8b366d-c216-4a31-b73a-90f64e5e747e/CON_2024.jpg Publications - Ethological computational psychiatry: Challenges and opportunities. Current Opinion in Neurobiology, 2024 Ilya E. Monosov*, Jan Zimmermann, Michael J. Frank*, Mackenzie W. Mathis*, Justin T. Baker* (*equal contributions) https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/7573a5b9-0ab0-4643-8bed-0818cc0a0141/Group+436.png Publications - AmadeusGPT: a natural language interface for interactive animal behavioral analysis. NeurIPS, 2023 Shaokai Ye, Jessy Lauer, Mu Zhou, Alexander Mathis, Mackenzie W. Mathis https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/6bcc119d-42e3-4cef-b97d-7f16ae956e2c/iccv2023-icon.jpg Publications - Rethinking pose estimation in crowds: overcoming the detection information-bottleneck and ambiguity. ICCV, 2023 Mu Zhou*, Lucas Stoffl*, Mackenzie W. Mathis, Alexander Mathis https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/5188f275-2529-4202-83b5-d93cd8ebc378/abstract_cebra.jpg Publications - Learnable latent embeddings for joint behavioural and neural analysis. Nature, 2023 Steffen Schneider, Jin Hwa Lee & Mackenzie Weygandt Mathis Nature volume 617, pages360–368 (2023) https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/7862f0e6-7553-460a-9278-e28012d70270/squirrel_gif.gif Publications - NeuroAI: If grid cells are the answer, is path integration the question? Current Biology, 2023 Dispatch Article for Sorscher et al 2023 Neuron Markus Frey, Mackenzie W. Mathis, Alexander Mathis https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/5e5e50d9-9dea-44c7-a15b-df30dcf51bba/1-s2.0-S0092867422015240-gr1_lrg.jpg Publications - Reaching an understanding of cortico-medullary control of forelimb behaviors. Cell, 2023 Preview article for Yang et al. 2023 Cell Thomas T.J. Sainsbury, Mackenzie W. Mathis https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/33daffb5-dc4c-40c7-813d-c2c224cdf1b7/Screen+Shot+2023-02-04+at+7.41.47+PM.png Publications - The neocortical column as a universal template for perception and world-model learning. Nature Reviews Neuroscience, 2023 Mackenzie Weygandt Mathis https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/cda47fe7-7b26-43f7-8d23-e1916eebd2fd/1-s2.0-S0896627322008996-gr1.jpg Publications - Next-generation brain observatories. Neuron, 2022 Christof Koch, Karel Svoboda,* Amy Bernard, Michele A. Basso, Anne K. Churchland, Adrienne L. Fairhall, Peter A. Groblewski, Jerome A. Lecoq, Zachary F. Mainen, Mackenzie W. Mathis, Shawn R. Olsen, John w. Phillips, Alexandre Pouget, Shreya Saxena, Josh H. Siegle, and Anthony M. Zador https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/5c04ef47-cf7d-460e-beac-90f705b5d7ce/akiti2022.png Publications - Striatal dopamine explains novelty-induced behavioral dynamics and individual variability in threat prediction. Neuron, 2022 Korleki Akiti, Iku Tsutsui-Kimura, Yudi Xie, Alexander Mathis, Jeffrey Markowitz, Rockwell Anyoha, Sandeep Robert Datta, Mackenzie Weygandt Mathis, Naoshige Uchida, Mitsuko Watabe-Uchida. https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/2419258c-7c52-490f-9278-8be4810f9901/ezgif.com-gif-maker+%282%29.gif Publications - Multi-animal pose estimation, identification and tracking with DeepLabCut. Nature Methods, 2022 Jessy Lauer, Mu Zhou, Shaokai Ye, William Menegas, Steffen Schneider, Tanmay Nath, Mohammed Mostafizur Rahman, Valentina Di Santo, Daniel Soberanes, Guoping Feng, Venkatesh N. Murthy, George Lauder, Catherine Dulac, Mackenzie Weygandt Mathis* & Alexander Mathis* https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/742de4cb-6255-43b8-a3a3-5d530523eae9/newzebraWorldScreen%404x.png Publications - Perspectives in machine learning for wildlife conservation. Nature Communications, 2022 Devis Tuia, Benjamin Kellenberger, Sara Beery, Blair R. Costelloe, Silvia Zuffi, Benjamin Risse, Alexander Mathis, Mackenzie W. Mathis, Frank van Langevelde, Tilo Burghardt, Roland Kays, Holger Klinck, Martin Wikelski, Iain D. Couzin, Grant van Horn, Margaret C. Crofoot, Charles V. Stewart & Tanya Berger-Wolf https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/e288a186-f59b-4ef5-aa5a-1cd1ece8c1eb/Joska.jpg Publications - AcinoSet: A 3D Pose Estimation Dataset and Baseline Models for Cheetahs in the Wild. ICRA, 2021 Daniel Joska, Liam Clark, Naoya Muramatsu, Ricardo Jericevich, Fred Nicolls, Alexander Mathis, Mackenzie W. Mathis & Amir Patel. https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1623342482826-6T79LDOZ97I310OCTP1K/1-s2.0-S0959438821000519-gr1_lrg.jpg Publications - Measuring and modeling the motor system with machine learning. Current Opinion in Neurobiology, 2021 Sebastien B. Hausmann, Alessandro Marin Vargas, Alexander Mathis, Mackenzie W. Mathis https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1620643603719-Y9BNVJ7OI6VT43BVH21G/pybulletM.png Publications - Out-of-distribution generalization of internal models is correlated with reward. ICLR-W, 2021 Khushdeep S. Mann∗, Steffen Schneider∗, Alberto Chiappa, Jin H. Lee, Matthias Bethge, Alexander Mathis, Mackenzie W. Mathis https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1618239686086-DFPG8V19DUYLOXV2UWJ1/1-s2.0-S0960982221001524-gr1_lrg.jpg Publications - Motor control: Neural correlates of optimal feedback control theory. Current Biology, 2021 Mackenzie W. Mathis, Steffen Schneider. Dispatch Review Paper on: Transient deactivation of dorsal premotor cortex or parietal area 5 impairs feedback control of the limb in macaques https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/b8119dde-1d3d-4970-9184-04583d9a5eb9/Screen+Shot+2021-04-12+at+5.06.12+PM.jpg Publications - Dynamic extrinsic pacing of the HOX clock in human axial progenitors controls motor neuron subtype specification. Development, 2021 Vincent Mouilleau, Célia Vaslin, Rémi Robert, Simona Gribaudo, Nour Nicolas, Margot Jarrige, Angélique Terray, Léa Lesueur, Mackenzie W. Mathis, Gist Croft, Mathieu Daynac, Virginie Rouiller-Fabre, Hynek Wichterle, Vanessa Ribes, Cécile Martinat, Stéphane Nedelec. https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/14da5e89-8a44-4eff-879e-12edce2090be/Screenshot%2Bfrom%2B2020-12-03%2B13-46-46.jpg Publications - Pretraining boosts out-of-domain robustness for pose estimation. WACV, 2021 Alexander Mathis*, Thomas Biasi*, Steffen Schneider, Mert Yüksekgönül, Byron Rogers, Matthias Bethge, Mackenzie W. Mathis. Also presented at the ICML 2020 Uncertainty & Robustness in Deep Learning Workshop. - Watch Thomas Biasi give a talk at WACV! - More details: horse10.deeplabcut.org https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/3ee64090-c93d-44bd-a32c-866098692ccb/DLCLiveBanner.jpg Publications - Real-time, low-latency closed-loop feedback using markerless posture tracking. eLife, 2020 Gary Kane, Gonçalo Lopes, Jonny L. Saunders, Alexander Mathis, Mackenzie W. Mathis. Read more in the news! Listen to an interview (french only) Watch Gary Kane speak at NeuroMatch! https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1607791021202-QRXZRXTWGQ17D288Y5F9/ezgif.com-gif-maker+%285%29.gif Publications - Generalized Invariant Risk Minimization: relating adaptation and invariant representation learning. NeurIPS-W, 2020 Steffen Schneider, Shubham Krishna, Luisa Eck, Wieland Brendel, Mackenzie W Mathis, Matthias Bethge. - Selected Oral: Watch Steffen Schneider give a talk at NeurIPS workshop! https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/736d89cd-2dbc-4556-a690-5f45f71c0b63/cover.tif.jpg Publications - A Primer on Motion Capture with Deep Learning: Principles, Pitfalls, and Perspectives. Neuron, 2020 Alexander Mathis, Steffen Schneider, Jessy Lauer, Mackenzie W Mathis https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/f7f065c7-56b6-460a-8eb9-844f0d9f7ba5/MM_fig1_v3_noBkgrnd_edited-01.jpg Publications - Deep learning tools for the measurement of animal behavior in neuroscience. Current Opinion in Neurobiology, 2020 Mackenzie W. Mathis & Alexander Mathis. https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1570125747062-DYM54ACS6KLEQ2UXD43A/fidgets.png Publications - A new spin on fidgets. Nature Neuroscience, 2019 New & Views on: Single-trial neural dynamics are dominated by richly varied movements Mackenzie W. Mathis. https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1570120535869-P39T6EZ4TOPVCW2OMLBG/NProt_cover_JUL19 Publications - Using DeepLabCut for 3D markerless pose estimation across species and behaviors. Nature Protocols, 2019 Tanmay Nath*, Alexander Mathis*, An Chi Chen, Amir Patel, Matthias Bethge, and Mackenzie W. Mathis. *co-first authors https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1563896652439-28CYWI51R9NTZPCSY8HZ/F1000.png Publications https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1570117705475-03R8C12JALENJ9QFGAQE/MATHIS_2018_odortrail.gif Publications - DeepLabCut: markerless pose estimation of user-defined body parts with deep learning. Nature Neuroscience, 2018 Alexander Mathis, Pranav Mamidanna, Kevin M. Cury, Taiga Abe, Venkatesh N. Murthy, Mackenzie W Mathis* & Matthias Bethge* ; *co-senior authors Read more in the Harvard Gazette, NVIDIA Developer News or The Atlantic Commentary: Behavior Tracking Cuts Deep [Lab Animal], Behavior Tracking Gets Real [Nature Neuroscience]. -Project Page: www.deeplabcut.org https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1537205405405-AASL7I0NLP64CPJ59E2O/MathisTalkimage.png Publications https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1506880506193-MGTH4P3VO2AI2SIPBFK7/nn.4345-f6_1.jpg Publications https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1506880575157-OCTB4KLASMOB2YXJJMI1/1-s2.0-s2211124716307379-fx1.jpg Publications https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1506880660724-71MGNKR2LGFUB10EUCL5/inline-graphic-1.gif Publications https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1506880829076-Z8NT8T30YXSV9J3FE771/1-s2.0-s0896627314000166-gr1.jpg Publications https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1506880791552-OJ9BABKH6PYV22RWOVLC/f4.medium.gif Publications https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1506880872782-JF7L910Y80EZUE954ADY/nihms-352274-f0002.jpg Publications https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1506881012026-IAPYP670ONWMSSNG5738/journal.pone_.0040154.g001.png Publications https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1506881036558-EXV8DDP8MY52R5QFCWH3/nbt.1783-f5.jpg Publications https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1506881061075-VN7EGZTHXPUC63DFCU2I/nihms-263177-f0005.jpg Publications https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1729265173558-DOZYMBGMBZ3UAMR2VML6/cover.tif.jpg Publications - Cell 2024 "Decoding the Brain" Oct 17 2024 Issue https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1727195019604-QUERZWFJ36XXY1W0NAUV/NProt_cover_JUL19_print.jpg Publications - Nature Protocols 2019 "Deep Learning 4Animals" Cover Selected | Nath, Mathis et al. 2019 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1727557760900-MLN8T39V3WB05BXH14CA/cover.tif.jpg Publications - Neuron 2020 "Motion Tracking Technology" https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1727194978120-ESGQE9LTL3MTEICASOTM/cebra_artwork.png Publications - Nature 2023 "Hidden Dynamics" Cover Not Selected | For Schneider, Lee, Mathis 2023 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1727194983466-ZJJCR0T0TMTGWOJ47H4F/8.jpg Publications - Nature Neuroscience 2018 Cover Not Selected | For DeepLabCut, Mathis et al. 2018 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1727195343417-OHQVMK9Z3Y01L9KIV8UO/MM_natMethCvr.jpg Publications - Nature Methods 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Alumni - Tim Kousi https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1738441651891-OA6X9LZZ1WRYFKGMKA1R/SebHausmann.jpg Alumni - Sébastien Hausmann https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1744744698124-MSJWT6IFX99UNNYF8AA4/niels2025.jpg Alumni - Niels Poulsen https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1749898854013-8DH176K2PAYUB63R01A1/Tom2021.png Alumni - Thomas Sainsbury https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1749898854009-KFMDYTFT6B2TLA8M9F3C/Shaokai2021.png Alumni - Shaokai Ye https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1749898855192-5CR9BDF7HKZOYKTU5R5A/maxim.jpg Alumni - Maxim Pavliv https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1758118024296-840E1KAKA2CRNQC7183L/sander2025.webp Alumni - Sander Meisen http://www.mackenziemathislab.org/ourresearch daily 0.75 2025-02-01 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/328b7c42-f9c1-4b3b-8f88-a2e3ebbb9b96/Screen+Shot+2022-06-08+at+11.38.08+AM.png Our Research https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/9279af37-60b5-4393-bc91-390112766ddd/Group+719.png Our Research https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1629376955859-GJYS6KK1S8A8ELM92LL6/ezgif.com-gif-maker+%2815%29.gif Our Research https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/328b7c42-f9c1-4b3b-8f88-a2e3ebbb9b96/Screen+Shot+2022-06-08+at+11.38.08+AM.png Our Research https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1680432226917-J1AK8JZ2SL7B2AD086Y9/gr1_lrg.jpg Our Research - Somatosensory Cortex Plays an Essential Role in Forelimb Motor Adaptation in Mice. Neuron 2017. https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1680432019707-DJQ6JFJ4Q4BWV4RD13NL/dispatchMC.jpg Our Research - Motor control: Neural correlates of optimal feedback control theory. Current Biology 2021 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1680432302451-HPC6GOVXNGEPFGMA5I9M/elife-06346-fig1-v2.jpg Our Research - Serotonergic neurons signal reward and punishment on multiple timescales. eLife 2015 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1680432019396-LCZTIKZIXI2X78AUDNEW/cellreview.jpg Our Research - Reaching an understanding of cortico-medullary control of forelimb behaviors. Cell, 2023 Preview article for Yang et al. 2023 Cell https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/9279af37-60b5-4393-bc91-390112766ddd/Group+719.png Our Research https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1680432446789-WA6O2BIW7QF5AA8414XR/abstract_cebra.png Our Research - Learnable latent embeddings for joint behavioral and neural analysis https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1689497900690-C01VPEVC104I3H6URRTW/elife.png Our Research - Contrasting action and posture coding with hierarchical deep neural network models of proprioception https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1680432368160-T5CRLZ3EOUN3EO6J8BRT/hausmann.jpg Our Research - Measuring and modeling the motor system with machine learning. https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1680432359513-X5X0E7GZ0ZQ20S8XJJAQ/pybulletM.png Our Research - Out-of-distribution generalization of internal models is correlated with reward. https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1680432361254-RA7F73DACM1UCW9HGUL8/squirrel_gif.gif Our Research - NeuroAI: If grid cells are the answer, is path integration the question? https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1629376955859-GJYS6KK1S8A8ELM92LL6/ezgif.com-gif-maker+%2815%29.gif Our Research https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1680433461673-5OY3O80QR96UZ24RTPGV/MATHIS_2018_odortrail.gif Our Research - DeepLabCut: markerless pose estimation of user-defined body parts with deep learning. https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1680433472840-5HM9L70IYBR04E8ETE73/maDLC.gif Our Research - Multi-animal pose estimation, identification and tracking with DeepLabCut. https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1680433454985-2D0Q1BRIAZDODKBT6WB6/DLCLiveBanner.jpeg Our Research - Real-time, low-latency closed-loop feedback using markerless posture tracking https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1680433456008-HYEXE9BWR1HC68BTGOH8/horse10.jpeg Our Research - Pretraining boosts out-of-domain robustness for pose estimation http://www.mackenziemathislab.org/amadeusgpt daily 0.75 2024-06-06 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/9cd761b1-30f7-4d5b-9a8c-af5a04b03b7a/amadeusgpt_logo.png AmadeusGPT - Make it stand out Whatever it is, the way you tell your story online can make all the difference. https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/9cd761b1-30f7-4d5b-9a8c-af5a04b03b7a/amadeusgpt_logo.png AmadeusGPT - Make it stand out Whatever it is, the way you tell your story online can make all the difference. http://www.mackenziemathislab.org/home daily 1.0 2026-01-17 https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/de1586cb-f089-4673-a543-4b40e9e70a9d/Group%2B737.webp https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1650658824141-6FS85TRNQAO0PE20548C/circle-cropped%2B%2811%29.png Home - DeepLabCut https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1664539580689-Y3KFKK2A48ZIXOL92A49/image+510-modified+%281%29.png Home - CEBRA https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1664539631147-5Y10PB4B4VZRDOEY089O/Screen+Shot+2022-06-03+at+8.10+2.png Home - cellseg3D https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1650658824842-3KD653IVWM4IIJ4HNLC8/circle-cropped.png Home - Joystick tasks for mice https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1664542423024-ZLNBH32ILNCIS9TU245D/Group+469-modified+%281%29.png Home - VR games for mice https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1650658823656-3HB5LMRF06G8LZCP2BW2/imageedit_3_9178657695.gif Home - natural cognition in mice https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/d4cf4379-c995-45ea-97f8-b5e801c0b5db/cover.tif.jpg https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1700927330374-NLUIRPLR1LCPHM6YNWLL/Ye_amadeusGPT.png Home https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1690536131615-79NVS0VUPU3ZPCERER1G/iccv2023.png Home https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1690536039617-DCVYKB4N9NDPP28E6AX5/elife2023.png Home https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1688072019295-YFGO2YNHXKQ7NBT1X823/cebra2023.png Home https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1664543328481-IT59EKINUIJB02ZCPAFV/akiti2022.png Home https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1650647998233-FA59MUDB9CMYOUORPNTJ/maDLC.png Home https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1644667428828-ZCRH3UC26HNHC10887SQ/Tuia.png Home https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1644667426934-F95USMF7IC9A57FLV5MY/SH_paper.png Home https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1616674952742-WBHNNH5LIU5960DD7Y9E/Joska.png Home - ICRA 2021 New work in collaboration with Prof. Amir Patel's group is accepted to ICRA 2021! https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1621934808572-0N5D2U75EMWDCSAZ8L9H/man2021.png Home https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1621935167723-3FF5D78ZKKAVDHIX1RXU/mathis2021.png Home https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1621934908607-GNKU6OOQ313MO8V3JHGJ/mou2021.png Home https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1616675996698-WPUBLMJMHS41SLKPC6O8/Mathis.png Home Alongside this paper, we introduce two new robustness benchmarks, see more at horse10.deeplabcut.org https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1616676460580-Y6CTTX4507ZJ72B0W9NS/Kane2020.png Home New work from Mathis Lab postdoc Dr. Gary Kane and collaborators, describing our new real-time pose estimation software, published in eLife! https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1616675442255-ZBPFQZ044I17FP67QDFR/mathis2020.png Home https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/bb6082eb-4e38-4633-b412-d9cd772103d6/41583_2025_996_Fig3_HTML.webp https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/c3b0a1b0-7f4d-4755-b9b9-57c9000939fe/41583_2025_996_Fig2_HTML.webp https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/f5b38917-a26c-4761-8a2e-53facfb39de3/41583_2025_996_Fig2_HTML.webp https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/3436304b-c619-4dde-b3b6-acd0364bdafc/41593_2025_2169_Fig2_HTML.webp 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